Epigenome Data Browse-R: an interactive statistical browser for population genomics

Visit the online demo

Get source code from the EDB github repo.

• 1. Install instructions
  • 1.1. Install environment
  • 1.2. Automatic install using docker
  • 1.3. Manual install
• 2. Add a dataset
  • 2.1. Quickstart: Use demo datasets
  • 2.2. Basic steps
  • 2.3. Example directory structure for datasets
  • 2.4. Dataset config file
  • 2.5. Sample phenotype table
  • 2.6. Groups and grouping order
• 3. Adding demo datasets
• 4. Adding custom annotation tracks
  • 4.1. Directory structure for custom annotation
  • 4.2. anno_config.txt
• Navigating the Browse-R
  • Select a dataset
  • “Plot settings” panel
  • Sample selector
  • Genome Annotation
• 5. Extending Browse-R capabilities
  • 5.1. Add a datatype handler
  • 5.2. Current datatypes

Please send feedback to Shraddha [dot] Pai [at] camh [dot] ca. This website best viewed at 1280x800 resolution or better.